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  5. Solyc01g010510

Solyc01g010510


Description : Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT1G26900.1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g010510
Cluster HCCA clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
171135 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
41818 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
76175 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
99677 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At1g08070 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Orthogroups_2024-Update
At1g31920 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.04 Orthogroups_2024-Update
At3g57430 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Orthogroups_2024-Update
At5g13270 No alias Pentatricopeptide repeat-containing protein At5g13270,... 0.02 Orthogroups_2024-Update
Bradi1g51700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G380195 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G455587 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G226200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G148000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G213300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G053030.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G124580.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os05g12130 No alias EMB2261, putative, expressed 0.02 Orthogroups_2024-Update
MA_17949g0010 No alias (at3g57430 : 648.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.5G028800.1 No alias RNA editing factor *(PGN) 0.01 Orthogroups_2024-Update
Sobic.002G048200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G100400.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g018640 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen06g033290 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen10g004410 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen12g032510 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0016073 snRNA metabolic process IEP Predicted GO
BP GO:0016180 snRNA processing IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034472 snRNA 3'-end processing IEP Predicted GO
BP GO:0034477 U6 snRNA 3'-end processing IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043628 ncRNA 3'-end processing IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 408 456
IPR002885 Pentatricopeptide_repeat 108 136
IPR002885 Pentatricopeptide_repeat 181 207
IPR002885 Pentatricopeptide_repeat 483 507
IPR002885 Pentatricopeptide_repeat 209 239
No external refs found!