Description : (at5g55590 : 238.0) Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.; QUARTET 1 (QRT1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pectin catabolic process; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 5 post anthesis, sepals enclosing floral bud, petal differentiation and expansion stage, fruit development stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G47500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83948|pme3_citsi : 139.0) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3) - Citrus sinensis (Sweet orange) & (reliability: 476.0) & (original description: no original description)
Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00022041-RA | |
Cluster | HCCA clusters: Cluster_71 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
HORVU2Hr1G032220.4 | No alias | pectin methylesterase | 0.03 | Orthogroups_2024-Update | |
MA_10428610g0020 | No alias | (at5g19730 : 384.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
PSME_00019845-RA | No alias | (at2g21610 : 304.0) pectinesterase 11 (PE11); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
PSME_00020050-RA | No alias | (at2g21610 : 321.0) pectinesterase 11 (PE11); FUNCTIONS... | 0.06 | Orthogroups_2024-Update | |
Potri.018G068400 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s129_155V6 | No alias | pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Pp1s45_249V6 | No alias | pectin methylesterase | 0.02 | Orthogroups_2024-Update | |
Pp1s55_167V6 | No alias | pectin methylesterase | 0.03 | Orthogroups_2024-Update | |
Solyc04g080530 | No alias | Pectinesterase (AHRD V3.3 *** K4BVD2_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Sopen09g034620 | No alias | Pectinesterase | 0.02 | Orthogroups_2024-Update | |
Sopen12g003480 | No alias | Pectinesterase | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0030599 | pectinesterase activity | IEA | InterProScan predictions |
BP | GO:0042545 | cell wall modification | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
MF | GO:0004650 | polygalacturonase activity | IEP | Predicted GO |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0006281 | DNA repair | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006950 | response to stress | IEP | Predicted GO |
MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Predicted GO |
MF | GO:0016759 | cellulose synthase activity | IEP | Predicted GO |
MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
BP | GO:0030243 | cellulose metabolic process | IEP | Predicted GO |
BP | GO:0030244 | cellulose biosynthetic process | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000070 | Pectinesterase_cat | 67 | 275 |
No external refs found! |