1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00022155-RA

PSME_00022155-RA


Description : (at1g20270 : 301.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1); Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0; Bacteria - 393; Metazoa - 997; Fungi - 73; Plants - 409; Viruses - 15; Other Eukaryotes - 592 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0000226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000226_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022155-RA
Cluster HCCA clusters: Cluster_729

Target Alias Description ECC score Gene Family Method Actions
A4A49_32055 No alias putative prolyl 4-hydroxylase 9 0.01 Orthogroups_2024-Update
At3g06300 No alias Prolyl 4-hydroxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JAU3] 0.02 Orthogroups_2024-Update
At3g28480 No alias Oxoglutarate/iron-dependent oxygenase... 0.01 Orthogroups_2024-Update
Cre10.g424900 No alias 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase... 0.01 Orthogroups_2024-Update
Kfl00074_0090 kfl00074_0090_v1.... (at2g43080 : 132.0) Encodes a prolyl-4 hydroxylase that... 0.02 Orthogroups_2024-Update
LOC_Os05g41010 No alias oxidoreductase, putative, expressed 0.01 Orthogroups_2024-Update
Seita.9G081700.1 No alias prolyl hydroxylase 0.03 Orthogroups_2024-Update
Sobic.001G205900.1 No alias prolyl hydroxylase 0.01 Orthogroups_2024-Update
Sobic.004G353500.1 No alias prolyl hydroxylase 0.02 Orthogroups_2024-Update
Sobic.008G115800.1 No alias prolyl hydroxylase 0.01 Orthogroups_2024-Update
Solyc11g005200 No alias Prolyl 4-hydroxylase subunit alpha-1 (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen03g004340 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005123 Oxoglu/Fe-dep_dioxygenase 95 212
No external refs found!