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  5. PSME_00022170-RA

PSME_00022170-RA


Description : (at1g53820 : 134.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72310.1); Has 9301 Blast hits to 9282 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2391; Fungi - 736; Plants - 4843; Viruses - 80; Other Eukaryotes - 1251 (source: NCBI BLink). & (q9lrb7|el5_orysa : 91.3) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 268.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022170-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
172324 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_10444 No alias e3 ubiquitin-protein ligase atl9 0.02 Orthogroups_2024-Update
A4A49_35950 No alias e3 ubiquitin-protein ligase atl41 0.03 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.03 Orthogroups_2024-Update
At1g53820 No alias RING-H2 finger protein ATL60... 0.02 Orthogroups_2024-Update
At2g37580 No alias RING-H2 finger protein ATL33... 0.04 Orthogroups_2024-Update
At4g35480 No alias RHA3B [Source:UniProtKB/TrEMBL;Acc:A0A178UXS9] 0.05 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C03025.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02317.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.02 Orthogroups_2024-Update
Brara.G03117.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01760.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G015409 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G135011 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G171277 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G409372 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G460958 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G156500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G202500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G242800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G042300 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G232800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G178400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G056000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.05 Orthogroups_2024-Update
HORVU3Hr1G015780.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU3Hr1G028260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU3Hr1G081150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G069980.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU5Hr1G096480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G011010.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU6Hr1G022590.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G051480.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G051510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G091610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os01g11480 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g15000 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g15010 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g36310 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g40020 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g34870 No alias Zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g06540 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g38110 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436650g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.11 Orthogroups_2024-Update
MA_114175g0010 No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.05 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.05 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_41514g0010 No alias (at5g01880 : 91.3) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_6697g0010 No alias (at1g72310 : 120.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_69343g0010 No alias (at1g49230 : 137.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.06 Orthogroups_2024-Update
MA_77628g0010 No alias (at1g72310 : 116.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.06 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_9143538g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00010570-RA No alias (at4g10150 : 105.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.002G006400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G075200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.04 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Potri.013G025800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G076800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G049300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Seita.1G197500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G197600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.2G238400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.3G074900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.5G149000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.8G248200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.002G416300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G114200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G181400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G187600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G283400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.005G012100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G175600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g123680 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1) 0.03 Orthogroups_2024-Update
Solyc04g009780 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.03 Orthogroups_2024-Update
Solyc12g087860 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen04g004890 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen04g006320 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen04g036320 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen06g017190 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen07g027380 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_2102.17 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 101 144
No external refs found!