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  5. PSME_00022181-RA

PSME_00022181-RA


Description : (at5g55540 : 1339.0) Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.; TORNADO 1 (TRN1); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G10510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2678.0) & (original description: no original description)


Gene families : OG_42_0001505 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001505_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022181-RA
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Brara.J00995.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.18G081800 No alias tornado 1 0.03 Orthogroups_2024-Update
MA_94605g0020 No alias (at5g55540 : 867.0) Encodes a large plant-specific... 0.05 Orthogroups_2024-Update
Mp1g14900.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp3g01070.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.05 Orthogroups_2024-Update
Mp4g13150.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp4g13180.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp4g13230.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.04 Orthogroups_2024-Update
Mp4g13240.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp4g13520.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp6g05800.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp6g17160.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp7g12460.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp8g04240.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.04 Orthogroups_2024-Update
Mp8g04890.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Mp8g14550.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Mp8g15330.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Pp1s356_8V6 No alias MTE17.26; expressed protein [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Pp1s67_215V6 No alias MTE17.26; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Sopen03g031830 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR032171 COR 711 921
No external refs found!