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  5. PSME_00022344-RA

PSME_00022344-RA


Description : (p45733|pal3_tobac : 833.0) Phenylalanine ammonia-lyase (EC 4.3.1.5) - Nicotiana tabacum (Common tobacco) & (at3g53260 : 827.0) Encodes phenylalanine lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).; phenylalanine ammonia-lyase 2 (PAL2); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to oxidative stress, response to karrikin, phenylpropanoid biosynthetic process, response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4835 Blast hits to 4816 proteins in 1397 species: Archae - 40; Bacteria - 2928; Metazoa - 79; Fungi - 127; Plants - 1172; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink). & (reliability: 1654.0) & (original description: no original description)


Gene families : OG_42_0000392 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000392_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022344-RA
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
A4A49_16794 No alias phenylalanine ammonia-lyase 0.04 Orthogroups_2024-Update
Bradi3g47110 No alias PHE ammonia lyase 1 0.02 Orthogroups_2024-Update
Bradi3g49250 No alias PHE ammonia lyase 1 0.02 Orthogroups_2024-Update
Brara.B00136.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D00537.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Brara.E03023.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.02 Orthogroups_2024-Update
Brara.G01580.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
GRMZM2G081582 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Glyma.03G181600 No alias PHE ammonia lyase 1 0.02 Orthogroups_2024-Update
Glyma.19G182300 No alias PHE ammonia lyase 1 0.05 Orthogroups_2024-Update
Glyma.20G180800 No alias phenylalanine ammonia-lyase 2 0.03 Orthogroups_2024-Update
HORVU6Hr1G058840.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
LOC_Os02g41670 No alias phenylalanine ammonia-lyase, putative, expressed 0.03 Orthogroups_2024-Update
MA_10429279g0010 No alias (p24481|pal1_petcr : 914.0) Phenylalanine ammonia-lyase... 0.03 Orthogroups_2024-Update
MA_73113g0010 No alias (p45733|pal3_tobac : 734.0) Phenylalanine ammonia-lyase... 0.05 Orthogroups_2024-Update
Mp1g10150.1 No alias phenylalanine ammonia lyase (PAL) 0.02 Orthogroups_2024-Update
Mp4g10060.1 No alias phenylalanine ammonia lyase (PAL) 0.02 Orthogroups_2024-Update
PSME_00056212-RA No alias (p35513|pal2_tobac : 803.0) Phenylalanine ammonia-lyase... 0.05 Orthogroups_2024-Update
Potri.016G091100 No alias PHE ammonia lyase 1 0.03 Orthogroups_2024-Update
Pp1s22_3V6 No alias phenylalanine ammonia-lyase 0.03 Orthogroups_2024-Update
Pp1s43_79V6 No alias phenylalanine ammonia-lyase 0.03 Orthogroups_2024-Update
Pp1s43_88V6 No alias phenylalanine ammonia-lyase 0.02 Orthogroups_2024-Update
Pp1s494_3V6 No alias phenylalanine ammonia-lyase 0.02 Orthogroups_2024-Update
Seita.1G240200.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.05 Orthogroups_2024-Update
Seita.1G240400.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Seita.1G240500.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.05 Orthogroups_2024-Update
Seita.7G168700.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.02 Orthogroups_2024-Update
Sobic.001G160500.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.04 Orthogroups_2024-Update
Sobic.004G220300.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.04 Orthogroups_2024-Update
Sobic.004G220500.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Sobic.006G148800.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.03 Orthogroups_2024-Update
Sobic.006G148900.1 No alias phenylalanine ammonia lyase *(PAL) & EC_4.3 carbon-nitrogen lyase 0.04 Orthogroups_2024-Update
Solyc03g042560 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL1_SOLLC) 0.02 Orthogroups_2024-Update
Solyc03g071860 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g007900 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g007920 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc10g011920 No alias Phenylalanine ammonia-lyase (AHRD V3.3 *** A0A124SBF6_CYNCS) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 124 595
No external refs found!