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  5. PSME_00022392-RA

PSME_00022392-RA


Description : (at3g13540 : 238.0) Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).; myb domain protein 5 (MYB5); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 17 (TAIR:AT3G61250.1); Has 8972 Blast hits to 8275 proteins in 512 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 461; Plants - 5987; Viruses - 3; Other Eukaryotes - 1687 (source: NCBI BLink). & (p20025|myb38_maize : 214.0) Myb-related protein Zm38 - Zea mays (Maize) & (reliability: 476.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022392-RA
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
39516 No alias myb domain protein 3 0.03 Orthogroups_2024-Update
84195 No alias myb domain protein 61 0.03 Orthogroups_2024-Update
At3g08500 No alias Transcription factor MYB83... 0.03 Orthogroups_2024-Update
At5g52260 No alias MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5] 0.02 Orthogroups_2024-Update
Bradi2g04252 No alias myb domain protein 50 0.02 Orthogroups_2024-Update
Bradi3g42350 No alias myb domain protein 7 0.02 Orthogroups_2024-Update
Bradi3g49190 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Bradi4g36460 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Brara.B00350.1 No alias MYB class-R2R3 subgroup-10/24 transcription factor 0.04 Orthogroups_2024-Update
Brara.B01349.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.02 Orthogroups_2024-Update
Brara.G00892.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
Brara.J00431.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G047600 No alias myb domain protein 112 0.03 Orthogroups_2024-Update
Glyma.06G188400 No alias Duplicated homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G299900 No alias myb domain protein 14 0.02 Orthogroups_2024-Update
Glyma.06G300400 No alias myb domain protein 74 0.02 Orthogroups_2024-Update
Glyma.07G073000 No alias myb domain protein 17 0.02 Orthogroups_2024-Update
Glyma.08G191500 No alias myb domain protein 26 0.03 Orthogroups_2024-Update
Glyma.13G061900 No alias myb domain protein 16 0.04 Orthogroups_2024-Update
Glyma.20G032900 No alias myb domain protein 106 0.03 Orthogroups_2024-Update
HORVU2Hr1G041300.2 No alias MYB class-R2R3 subgroup-11 transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G103970.5 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g03720 No alias MYB family transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g50770 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00023605-RA No alias (p20026|myb1_horvu : 272.0) Myb-related protein Hv1 -... 0.04 Orthogroups_2024-Update
PSME_00040036-RA No alias (at5g55020 : 216.0) Encodes a putative transcription... 0.05 Orthogroups_2024-Update
PSME_00042064-RA No alias (p20026|myb1_horvu : 274.0) Myb-related protein Hv1 -... 0.06 Orthogroups_2024-Update
PSME_00051224-RA No alias (at5g15310 : 212.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
PSME_00051726-RA No alias (at5g65790 : 233.0) Encodes a putative MYB transcription... 0.04 Orthogroups_2024-Update
PSME_00052797-RA No alias (at3g13890 : 180.0) Encodes a putative transcription... 0.06 Orthogroups_2024-Update
Potri.001G408700 No alias MYB-like 102 0.03 Orthogroups_2024-Update
Pp1s371_6V6 No alias myb transcription factor myb92 0.04 Orthogroups_2024-Update
Seita.1G250600.1 No alias regulatory protein *(LAF1) of phytochrome signalling... 0.06 Orthogroups_2024-Update
Seita.2G400600.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G161500.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G232500.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G020300.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G016600.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G016633.1 No alias MYB class-R2R3 transcription factor 0.04 Orthogroups_2024-Update
Solyc10g055410 No alias R2R3MYB transcription factor 32 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 14 61
IPR001005 SANT/Myb 72 112
No external refs found!