Description : (at3g57430 : 647.0) Encodes a chloroplast RNA editing factor.; ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). & (q76c99|rf1_orysa : 140.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1294.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00022404-RA | |
Cluster | HCCA clusters: Cluster_179 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
30095 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At5g52630 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
Brara.F01301.1 | No alias | RNA editing factor *(OTP970) | 0.02 | Orthogroups_2024-Update | |
GRMZM2G462625 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G102000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.14G194400 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.14G224400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G113990.21 | No alias | RNA editing factor *(CRR28) | 0.02 | Orthogroups_2024-Update | |
MA_10429043g0020 | No alias | (at4g18750 : 616.0) Encodes a pentatricopeptide (PPR)... | 0.06 | Orthogroups_2024-Update | |
MA_110266g0010 | No alias | (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... | 0.05 | Orthogroups_2024-Update | |
MA_25584g0010 | No alias | (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_771696g0010 | No alias | (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_87646g0010 | No alias | (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... | 0.06 | Orthogroups_2024-Update | |
PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00038093-RA | No alias | (at2g27610 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.06 | Orthogroups_2024-Update | |
PSME_00056947-RA | No alias | (at2g22070 : 647.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Pp1s543_6V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.03 | Orthogroups_2024-Update | |
Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
Sobic.004G312000.1 | No alias | RNA editing factor *(CLB19) | 0.03 | Orthogroups_2024-Update | |
Sobic.009G155400.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc11g065250 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen03g034780 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen09g004550 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen09g022760 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004435 | phosphatidylinositol phospholipase C activity | IEP | Predicted GO |
MF | GO:0004620 | phospholipase activity | IEP | Predicted GO |
MF | GO:0004629 | phospholipase C activity | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
MF | GO:0016298 | lipase activity | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
BP | GO:0035556 | intracellular signal transduction | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 328 | 351 |
IPR002885 | Pentatricopeptide_repeat | 696 | 725 |
IPR002885 | Pentatricopeptide_repeat | 125 | 150 |
IPR002885 | Pentatricopeptide_repeat | 253 | 301 |
IPR002885 | Pentatricopeptide_repeat | 354 | 401 |
IPR002885 | Pentatricopeptide_repeat | 557 | 603 |
IPR002885 | Pentatricopeptide_repeat | 154 | 199 |
IPR002885 | Pentatricopeptide_repeat | 454 | 501 |
IPR032867 | DYW_dom | 729 | 853 |
No external refs found! |