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  5. PSME_00022409-RA

PSME_00022409-RA


Description : (at1g07900 : 148.0) LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022409-RA
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
A4A49_10474 No alias lob domain-containing protein 25 0.03 Orthogroups_2024-Update
At3g26620 No alias LOB domain-containing protein 23... 0.05 Orthogroups_2024-Update
At3g27650 No alias LOB domain-containing protein 25... 0.03 Orthogroups_2024-Update
At5g15060 No alias LOB domain-containing protein 34... 0.03 Orthogroups_2024-Update
Bradi2g25270 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Orthogroups_2024-Update
Bradi2g53690 No alias LOB domain-containing protein 13 0.02 Orthogroups_2024-Update
Bradi4g44850 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Orthogroups_2024-Update
Brara.C02407.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Brara.F02209.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
Brara.G00548.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Brara.G01214.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I00725.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G133806 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Orthogroups_2024-Update
GRMZM2G145568 No alias LOB domain-containing protein 11 0.04 Orthogroups_2024-Update
GRMZM2G154320 No alias ASYMMETRIC LEAVES 2-like 1 0.02 Orthogroups_2024-Update
Glyma.05G004400 No alias LOB domain-containing protein 25 0.04 Orthogroups_2024-Update
Glyma.05G040500 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.09G021600 No alias LOB domain-containing protein 4 0.03 Orthogroups_2024-Update
Glyma.10G213500 No alias LOB domain-containing protein 1 0.03 Orthogroups_2024-Update
Glyma.13G349700 No alias LOB domain-containing protein 22 0.04 Orthogroups_2024-Update
Glyma.15G045200 No alias LOB domain-containing protein 11 0.06 Orthogroups_2024-Update
Glyma.15G127900 No alias LOB domain-containing protein 4 0.03 Orthogroups_2024-Update
Glyma.19G004900 No alias LOB domain-containing protein 25 0.06 Orthogroups_2024-Update
LOC_Os05g07270 No alias DUF260 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g06659 No alias expressed protein 0.04 Orthogroups_2024-Update
MA_10429262g0010 No alias (at5g63090 : 192.0) Involved in lateral organ... 0.03 Orthogroups_2024-Update
MA_170661g0010 No alias (at2g28500 : 149.0) LOB domain-containing protein 11... 0.03 Orthogroups_2024-Update
MA_19975g0010 No alias (at2g28500 : 96.3) LOB domain-containing protein 11... 0.05 Orthogroups_2024-Update
MA_84752g0010 No alias (at2g40470 : 201.0) LOB domain-containing protein 15... 0.04 Orthogroups_2024-Update
MA_85817g0010 No alias (at1g07900 : 152.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
MA_902082g0010 No alias (at1g07900 : 123.0) LOB domain-containing protein 1... 0.03 Orthogroups_2024-Update
MA_9412105g0010 No alias (at2g40470 : 200.0) LOB domain-containing protein 15... 0.04 Orthogroups_2024-Update
MA_9924708g0010 No alias (at1g31320 : 131.0) LOB domain-containing protein 4... 0.04 Orthogroups_2024-Update
PSME_00022332-RA No alias (at2g40470 : 197.0) LOB domain-containing protein 15... 0.05 Orthogroups_2024-Update
PSME_00028195-RA No alias (at2g28500 : 135.0) LOB domain-containing protein 11... 0.03 Orthogroups_2024-Update
PSME_00041736-RA No alias (at1g07900 : 133.0) LOB domain-containing protein 1... 0.03 Orthogroups_2024-Update
PSME_00053746-RA No alias (at1g07900 : 130.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
PSME_00056008-RA No alias (at2g30130 : 185.0) Overexpression/activation tagged... 0.06 Orthogroups_2024-Update
Potri.001G081400 No alias LOB domain-containing protein 4 0.04 Orthogroups_2024-Update
Potri.001G196400 No alias LOB domain-containing protein 22 0.03 Orthogroups_2024-Update
Potri.001G345700 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Potri.012G083500 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Potri.018G052700 No alias LOB domain-containing protein 22 0.03 Orthogroups_2024-Update
Pp1s12_355V6 No alias ramosa 2 0.03 Orthogroups_2024-Update
Pp1s73_7V6 No alias lob domain-containing 0.02 Orthogroups_2024-Update
Pp1s9_303V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.9G168800.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G443300.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc06g050430 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc11g045530 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen11g004610 No alias Protein of unknown function DUF260 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 10 107
No external refs found!