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  5. PSME_00022617-RA

PSME_00022617-RA


Description : (at3g52450 : 247.0) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.; plant U-box 22 (PUB22); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 23 (TAIR:AT2G35930.1); Has 2414 Blast hits to 2402 proteins in 185 species: Archae - 0; Bacteria - 30; Metazoa - 243; Fungi - 90; Plants - 1816; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). & (q64ha9|spl11_orysa : 113.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 494.0) & (original description: no original description)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022617-RA
Cluster HCCA clusters: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.04 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.04 Orthogroups_2024-Update
A4A49_33780 No alias e3 ubiquitin-protein ligase pub23 0.02 Orthogroups_2024-Update
At1g66160 No alias U-box domain-containing protein 20... 0.02 Orthogroups_2024-Update
GRMZM2G055052 No alias CYS, MET, PRO, and GLY protein 1 0.02 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.03 Orthogroups_2024-Update
GRMZM5G855994 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G154100 No alias plant U-box 22 0.02 Orthogroups_2024-Update
Glyma.12G095100 No alias plant U-box 23 0.02 Orthogroups_2024-Update
HORVU6Hr1G077120.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os04g34140 No alias U-box protein CMPG1, putative, expressed 0.02 Orthogroups_2024-Update
MA_33190g0010 No alias (at2g35930 : 324.0) Encodes a cytoplasmically localized... 0.06 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
Mp3g11730.1 No alias E3 ubiquitin ligase (PUB) 0.02 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Potri.016G069500 No alias plant U-box 24 0.02 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G474100.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc01g009320 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 84
IPR003613 Ubox_domain 210 282
No external refs found!