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Description : (o24415|rla2b_maize : 100.0) 60S acidic ribosomal protein P2B - Zea mays (Maize) & (at3g44590 : 85.5) 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)
Gene families : OG_42_0001058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00022751-RA | |
| Cluster | HCCA clusters: Cluster_117 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 139397 | No alias | 60S acidic ribosomal protein family | 0.1 | Orthogroups_2024-Update | |
| At2g27710 | No alias | AT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3] | 0.09 | Orthogroups_2024-Update | |
| At2g27720 | No alias | 60S acidic ribosomal protein family... | 0.04 | Orthogroups_2024-Update | |
| At3g44590 | No alias | Acidic ribosomal protein P2-like... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g23830 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| Bradi5g09212 | No alias | 60S acidic ribosomal protein family | 0.12 | Orthogroups_2024-Update | |
| Bradi5g09217 | No alias | 60S acidic ribosomal protein family | 0.11 | Orthogroups_2024-Update | |
| Brara.C02416.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.D01652.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.2 | Orthogroups_2024-Update | |
| Brara.G01325.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Cre02.g143050 | No alias | 60S acidic ribosomal protein family | 0.21 | Orthogroups_2024-Update | |
| GRMZM2G075630 | No alias | 60S acidic ribosomal protein family | 0.09 | Orthogroups_2024-Update | |
| GRMZM2G102891 | No alias | 60S acidic ribosomal protein family | 0.08 | Orthogroups_2024-Update | |
| GRMZM2G105712 | No alias | 60S acidic ribosomal protein family | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G119809 | No alias | 60S acidic ribosomal protein family | 0.1 | Orthogroups_2024-Update | |
| Glyma.03G193100 | No alias | 60S acidic ribosomal protein family | 0.11 | Orthogroups_2024-Update | |
| Glyma.10G067800 | No alias | 60S acidic ribosomal protein family | 0.09 | Orthogroups_2024-Update | |
| Glyma.12G182800 | No alias | 60S acidic ribosomal protein family | 0.14 | Orthogroups_2024-Update | |
| Glyma.13G318200 | No alias | 60S acidic ribosomal protein family | 0.11 | Orthogroups_2024-Update | |
| Glyma.19G193200 | No alias | 60S acidic ribosomal protein family | 0.09 | Orthogroups_2024-Update | |
| Glyma.U031221 | No alias | 60S acidic ribosomal protein family | 0.16 | Orthogroups_2024-Update | |
| HORVU1Hr1G073640.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| LOC_Os01g09510 | No alias | 60S acidic ribosomal protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
| LOC_Os05g37330 | No alias | 60S acidic ribosomal protein, putative, expressed | 0.05 | Orthogroups_2024-Update | |
| Mp1g06260.1 | No alias | component RPP2 of LSU proteome component | 0.1 | Orthogroups_2024-Update | |
| Mp1g08160.1 | No alias | component RPP2 of LSU proteome component | 0.03 | Orthogroups_2024-Update | |
| Mp1g18620.1 | No alias | component RPP2 of LSU proteome component | 0.03 | Orthogroups_2024-Update | |
| Potri.004G185800 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| Potri.009G146200 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| Pp1s14_289V6 | No alias | 60s acidic ribosomal protein | 0.18 | Orthogroups_2024-Update | |
| Pp1s21_165V6 | No alias | 60s acidic ribosomal protein | 0.23 | Orthogroups_2024-Update | |
| Pp1s30_261V6 | No alias | 60s acidic ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Pp1s409_34V6 | No alias | 60s acidic ribosomal protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s51_319V6 | No alias | 60s acidic ribosomal protein | 0.22 | Orthogroups_2024-Update | |
| Seita.6G192700.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Seita.7G089200.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Sobic.006G067800.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Sobic.006G260400.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Sobic.009G242300.3 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Solyc06g074430 | No alias | 60s acidic ribosomal protein-like protein (AHRD V3.3 ***... | 0.17 | Orthogroups_2024-Update | |
| Solyc11g067100 | No alias | 60s acidic ribosomal family protein (AHRD V3.3 *** A9PCM7_POPTR) | 0.15 | Orthogroups_2024-Update | |
| Sopen01g004990 | No alias | 60s Acidic ribosomal protein | 0.13 | Orthogroups_2024-Update | |
| Sopen06g030910 | No alias | 60s Acidic ribosomal protein | 0.2 | Orthogroups_2024-Update | |
| Sopen11g026810 | No alias | 60s Acidic ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| evm.model.contig_2346.3 | No alias | no hits & (original description: no original description) | 0.12 | Orthogroups_2024-Update | |
| evm.model.contig_3407.5 | No alias | no hits & (original description: no original description) | 0.21 | Orthogroups_2024-Update | |
| evm.model.tig00020830.75 | No alias | no hits & (original description: no original description) | 0.08 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005740 | mitochondrial envelope | IEP | Predicted GO |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0009055 | electron transfer activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
| MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Predicted GO |
| BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Predicted GO |
| MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
| MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0031967 | organelle envelope | IEP | Predicted GO |
| CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
| CC | GO:0031975 | envelope | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Predicted GO |
| BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| BP | GO:1902600 | proton transmembrane transport | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |