PSME_00022814-RA

Description : (at5g48220 : 106.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1). & (reliability: 212.0) & (original description: no original description)

Gene families : OG_42_0002544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002544_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00022814-RA
Cluster	HCCA clusters: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G106950	No alias	Aldolase-type TIM barrel family protein	0.03	Orthogroups_2024-Update
LOC_Os08g23150	No alias	indole-3-glycerol phosphate synthase, chloroplast...	0.03	Orthogroups_2024-Update
MA_4726g0020	No alias	(at5g48220 : 113.0) Aldolase-type TIM barrel family...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEA	InterProScan predictions
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predicted GO
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predicted GO
MF	GO:0051540	metal cluster binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013798	Indole-3-glycerol_P_synth	31	99

External Links

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PSME_00022814-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation