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  5. PSME_00022890-RA

PSME_00022890-RA


Description : (at2g44580 : 283.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0002192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022890-RA
Cluster HCCA clusters: Cluster_648

Target Alias Description ECC score Gene Family Method Actions
PSME_00010457-RA No alias (at2g44580 : 293.0) zinc ion binding; CONTAINS InterPro... 0.04 Orthogroups_2024-Update
PSME_00015490-RA No alias (at2g44580 : 204.0) zinc ion binding; CONTAINS InterPro... 0.05 Orthogroups_2024-Update
PSME_00027993-RA No alias (at2g44580 : 295.0) zinc ion binding; CONTAINS InterPro... 0.05 Orthogroups_2024-Update
PSME_00034887-RA No alias (at2g44580 : 320.0) zinc ion binding; CONTAINS InterPro... 0.03 Orthogroups_2024-Update
PSME_00036867-RA No alias (at2g44580 : 256.0) zinc ion binding; CONTAINS InterPro... 0.04 Orthogroups_2024-Update
PSME_00040667-RA No alias (at2g44580 : 270.0) zinc ion binding; CONTAINS InterPro... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007064 mitotic sister chromatid cohesion IEA InterProScan predictions
CC GO:0031390 Ctf18 RFC-like complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0000098 sulfur amino acid catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0030328 prenylcysteine catabolic process IEP Predicted GO
BP GO:0030329 prenylcysteine metabolic process IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR019128 Dcc1 20 322
No external refs found!