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  5. PSME_00022954-RA

PSME_00022954-RA


Description : (at1g66970 : 201.0) SHV3-like 2 (SVL2); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: suppressor of npr1-1 constitutive 4 (TAIR:AT1G66980.1). & (reliability: 402.0) & (original description: no original description)


Gene families : OG_42_0000724 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000724_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022954-RA
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
At4g26690 No alias Glycerophosphodiester phosphodiesterase GDPDL3... 0.02 Orthogroups_2024-Update
At5g58050 No alias Glycerophosphodiester phosphodiesterase GDPDL6... 0.02 Orthogroups_2024-Update
Brara.C01157.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.14G017100 No alias SHV3-like 2 0.03 Orthogroups_2024-Update
MA_34216g0010 No alias (at5g55480 : 472.0) Glycerophosphoryl diester... 0.06 Orthogroups_2024-Update
MA_37537g0020 No alias (at4g26690 : 394.0) Glycerophosphoryl diester... 0.05 Orthogroups_2024-Update
Seita.1G213900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G133500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g014490 No alias Glycerophosphoryl diester phosphodiesterase family... 0.03 Orthogroups_2024-Update
Sopen07g033330 No alias Glycerophosphoryl diester phosphodiesterase family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA InterProScan predictions
MF GO:0008081 phosphoric diester hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR030395 GP_PDE_dom 124 161
No external refs found!