PSME_00023020-RA

Description : (at1g79220 : 108.0) Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G64950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00023020-RA
Cluster	HCCA clusters: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
At1g62490	No alias	Mitochondrial transcription termination factor family...	0.03	Orthogroups_2024-Update
Bradi1g45338	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Bradi4g23197	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Brara.I01182.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I01480.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G161146	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Glyma.08G306100	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Glyma.18G112400	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G056910.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
LOC_Os05g33460	No alias	mTERF domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g34160	No alias	mTERF domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g10040	No alias	mTERF family protein, expressed	0.02	Orthogroups_2024-Update
MA_26585g0010	No alias	(at5g64950 : 83.2) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
MA_5255515g0010	No alias	(at5g64950 : 84.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
MA_6307g0010	No alias	(at5g64950 : 97.1) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
Mp3g14990.1	No alias	transcription factor (mTERF)	0.02	Orthogroups_2024-Update
PSME_00009256-RA	No alias	(at1g62110 : 82.4) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
Potri.015G038400	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Seita.1G321700.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.3G247400.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G095400.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G130600.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.001G034000.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G179800.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.004G235300.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0007049	cell cycle	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009733	response to auxin	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0050290	sphingomyelin phosphodiesterase D activity	IEP	Predicted GO
BP	GO:0051321	meiotic cell cycle	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	170	339
IPR003690	MTERF	101	172

External Links

No external refs found!

PSME_00023020-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation