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  5. PSME_00023089-RA

PSME_00023089-RA


Description : (at1g11290 : 225.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (reliability: 450.0) & (original description: no original description)


Gene families : OG_42_0010200 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010200_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023089-RA
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
114085 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_119519g0010 No alias (at4g37170 : 530.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006940-RA No alias (at3g12770 : 488.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 288
IPR002885 Pentatricopeptide_repeat 186 231
IPR002885 Pentatricopeptide_repeat 22 60
IPR002885 Pentatricopeptide_repeat 84 132
No external refs found!