PSME_00023170-RA

Description : (at1g42540 : 830.0) member of Putative ligand-gated ion channel subunit family; glutamate receptor 3.3 (GLR3.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.6 (TAIR:AT3G51480.1); Has 6567 Blast hits to 6430 proteins in 489 species: Archae - 28; Bacteria - 758; Metazoa - 4571; Fungi - 0; Plants - 644; Viruses - 2; Other Eukaryotes - 564 (source: NCBI BLink). & (q7xp59|glr31_orysa : 799.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 1660.0) & (original description: no original description)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00023170-RA
Cluster	HCCA clusters: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g26030	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
Bradi1g31350	No alias	glutamate receptor 2.2	0.05	Orthogroups_2024-Update
Bradi1g46947	No alias	glutamate receptor 2.5	0.02	Orthogroups_2024-Update
Bradi4g30840	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Bradi4g30850	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Bradi4g30880	No alias	glutamate receptor 2.7	0.06	Orthogroups_2024-Update
Brara.C01649.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Glyma.06G233900	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Glyma.13G172100	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
HORVU2Hr1G064530.8	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
LOC_Os04g49570	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g06130	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
MA_10140272g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_10432703g0020	No alias	(q7xp59\|glr31_orysa : 244.0) Glutamate receptor 3.1...	0.03	Orthogroups_2024-Update
MA_10434458g0010	No alias	(q7xp59\|glr31_orysa : 638.0) Glutamate receptor 3.1...	0.02	Orthogroups_2024-Update
MA_46902g0010	No alias	(at1g05200 : 769.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
MA_958834g0010	No alias	(at4g35290 : 358.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
Mp1g01040.1	No alias	ligand-gated cation channel (GLR)	0.02	Orthogroups_2024-Update
PSME_00000830-RA	No alias	(at2g29100 : 521.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00001098-RA	No alias	(at2g29120 : 637.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00001292-RA	No alias	(at4g35290 : 567.0) Encodes a putative glutamate...	0.09	Orthogroups_2024-Update
PSME_00007782-RA	No alias	(at2g17260 : 247.0) Encodes a glutamate receptor....	0.07	Orthogroups_2024-Update
PSME_00009649-RA	No alias	(at4g35290 : 475.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
PSME_00021963-RA	No alias	(at1g05200 : 294.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00033212-RA	No alias	(at1g42540 : 242.0) member of Putative ligand-gated ion...	0.07	Orthogroups_2024-Update
PSME_00037074-RA	No alias	(at1g05200 : 98.6) member of Putative ligand-gated ion...	0.05	Orthogroups_2024-Update
PSME_00040281-RA	No alias	(at2g29120 : 550.0) member of Putative ligand-gated ion...	0.01	Orthogroups_2024-Update
Potri.001G375100	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.007G044000	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
Potri.011G062750	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.011G062900	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.018G012100	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.018G012300	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Seita.1G346100.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Seita.2G212600.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Seita.2G212900.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.002G208500.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sobic.002G208700.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.002G209100.1	No alias	ligand-gated cation channel *(GLR)	0.05	Orthogroups_2024-Update
Sobic.010G068600.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.010G231300.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Solyc07g052390	No alias	glutamate receptor-like 3.1	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	InterProScan predictions
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008066	glutamate receptor activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008150	biological_process	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	825	854
IPR001638	Solute-binding_3/MltF_N	535	824
IPR001828	ANF_lig-bd_rcpt	60	417

External Links

No external refs found!

PSME_00023170-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation