1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00023355-RA

PSME_00023355-RA


Description : (at1g69550 : 205.0) disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0003224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003224_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023355-RA
Cluster HCCA clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
MA_10426873g0010 No alias (at1g60420 : 108.0) Reduce transmission through pollen.;... 0.03 Orthogroups_2024-Update
MA_6974769g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_709182g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 321 534
No external refs found!