PSME_00023521-RA

Description : (at1g29860 : 108.0) member of WRKY Transcription Factor; Group II-c; WRKY DNA-binding protein 71 (WRKY71); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 28 (TAIR:AT4G18170.1); Has 3523 Blast hits to 3068 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3507; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)

Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00023521-RA
Cluster	HCCA clusters: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
At4g18170	No alias	WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]	0.04	Orthogroups_2024-Update
Bradi3g09810	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Bradi4g28280	No alias	WRKY DNA-binding protein 46	0.03	Orthogroups_2024-Update
Brara.B01502.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D00345.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I01779.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I02860.1	No alias	WRKY-type transcription factor	0.05	Orthogroups_2024-Update
Brara.J01462.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G038158	No alias	WRKY family transcription factor	0.04	Orthogroups_2024-Update
Glyma.04G218400	No alias	WRKY DNA-binding protein 13	0.05	Orthogroups_2024-Update
Glyma.05G185400	No alias	WRKY DNA-binding protein 13	0.02	Orthogroups_2024-Update
Glyma.08G011300	No alias	WRKY DNA-binding protein 75	0.05	Orthogroups_2024-Update
Glyma.09G254800	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Glyma.13G289400	No alias	WRKY DNA-binding protein 69	0.05	Orthogroups_2024-Update
Glyma.17G222300	No alias	WRKY DNA-binding protein 40	0.05	Orthogroups_2024-Update
HORVU1Hr1G090190.6	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
HORVU2Hr1G034420.2	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
HORVU3Hr1G020210.2	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
HORVU5Hr1G124320.9	No alias	WRKY-type transcription factor	0.05	Orthogroups_2024-Update
LOC_Os01g61080	No alias	WRKY24, expressed	0.02	Orthogroups_2024-Update
PSME_00049501-RA	No alias	(at1g62300 : 149.0) Encodes a transcription factor...	0.05	Orthogroups_2024-Update
Potri.004G120800	No alias	WRKY DNA-binding protein 3	0.03	Orthogroups_2024-Update
Pp1s73_70V6	No alias	wrky11 - superfamily of tfs having wrky and zinc finger domains	0.03	Orthogroups_2024-Update
Seita.3G287200.1	No alias	WRKY-type transcription factor	0.05	Orthogroups_2024-Update
Seita.9G421700.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G285500.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.007G077466.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0017048	Rho GTPase binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	131	188

External Links

No external refs found!

PSME_00023521-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation