1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00023535-RA

PSME_00023535-RA


Description : (at3g05500 : 89.7) Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q9fra7|y5940_orysa : 85.5) Putative REF/SRPP-like protein Os05g0151300 - Oryza sativa (Rice) & (reliability: 179.4) & (original description: no original description)


Gene families : OG_42_0001183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023535-RA
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g47510 No alias stress-related protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00038248-RA No alias (at3g05500 : 95.9) Rubber elongation factor protein... 0.04 Orthogroups_2024-Update
Sopen09g029750 No alias Rubber elongation factor protein (REF) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR008802 REF 13 162
No external refs found!