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Description : (at5g01960 : 451.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)
Gene families : OG_42_0002170 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00023603-RA | |
| Cluster | HCCA clusters: Cluster_184 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi2g34430 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Solyc10g074810 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT5G01960.1) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predicted GO |
| MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Predicted GO |
| MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | Predicted GO |
| MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Predicted GO |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
| MF | GO:0008066 | glutamate receptor activity | IEP | Predicted GO |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
| MF | GO:0015276 | ligand-gated ion channel activity | IEP | Predicted GO |
| BP | GO:0022406 | membrane docking | IEP | Predicted GO |
| MF | GO:0022824 | transmitter-gated ion channel activity | IEP | Predicted GO |
| MF | GO:0022834 | ligand-gated channel activity | IEP | Predicted GO |
| MF | GO:0022835 | transmitter-gated channel activity | IEP | Predicted GO |
| MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
| MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
| MF | GO:0030594 | neurotransmitter receptor activity | IEP | Predicted GO |
| BP | GO:0035556 | intracellular signal transduction | IEP | Predicted GO |
| MF | GO:0038023 | signaling receptor activity | IEP | Predicted GO |
| BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
| BP | GO:0051640 | organelle localization | IEP | Predicted GO |
| MF | GO:0060089 | molecular transducer activity | IEP | Predicted GO |
| BP | GO:0140029 | exocytic process | IEP | Predicted GO |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |