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  5. PSME_00023671-RA

PSME_00023671-RA


Description : (at4g16640 : 207.0) Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT2G45040.1); Has 2701 Blast hits to 2501 proteins in 212 species: Archae - 6; Bacteria - 141; Metazoa - 2219; Fungi - 5; Plants - 183; Viruses - 44; Other Eukaryotes - 103 (source: NCBI BLink). & (p29136|mep1_soybn : 194.0) Metalloendoproteinase 1 precursor (EC 3.4.24.-) (SMEP1) - Glycine max (Soybean) & (reliability: 414.0) & (original description: no original description)


Gene families : OG_42_0000704 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000704_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023671-RA
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
A4A49_17533 No alias metalloendoproteinase 3-mmp 0.03 Orthogroups_2024-Update
Glyma.01G037100 No alias Matrixin family protein 0.02 Orthogroups_2024-Update
Glyma.02G028000 No alias Matrixin family protein 0.03 Orthogroups_2024-Update
Glyma.02G028600 No alias Matrixin family protein 0.04 Orthogroups_2024-Update
Glyma.07G109400 No alias Matrixin family protein 0.03 Orthogroups_2024-Update
LOC_Os06g13180 No alias metalloendoproteinase 1 precursor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.002G142500 No alias Matrixin family protein 0.02 Orthogroups_2024-Update
Potri.003G077400 No alias Matrixin family protein 0.04 Orthogroups_2024-Update
Potri.006G240700 No alias Matrixin family protein 0.02 Orthogroups_2024-Update
Seita.3G176100.1 No alias M10-class (Matrixin) metalloprotease & EC_3.4 hydrolase... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA InterProScan predictions
BP GO:0006508 proteolysis IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
CC GO:0031012 extracellular matrix IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 92 147
IPR001818 Pept_M10_metallopeptidase 200 360
No external refs found!