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  5. PSME_00023722-RA

PSME_00023722-RA


Description : (p28002|comt1_medsa : 233.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 220.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)


Gene families : OG_42_0000016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023722-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
A4A49_36761 No alias caffeic acid 3-o-methyltransferase 1 0.02 Orthogroups_2024-Update
Bradi4g18065 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
Brara.G03470.1 No alias EC_2.1 transferase transferring one-carbon group 0.03 Orthogroups_2024-Update
GRMZM2G085924 No alias O-methyltransferase family protein 0.02 Orthogroups_2024-Update
GRMZM2G140996 No alias O-methyltransferase family protein 0.03 Orthogroups_2024-Update
Glyma.04G227700 No alias O-methyltransferase 1 0.02 Orthogroups_2024-Update
Glyma.12G109800 No alias O-methyltransferase 1 0.03 Orthogroups_2024-Update
Glyma.20G176100 No alias O-methyltransferase 1 0.03 Orthogroups_2024-Update
HORVU1Hr1G076670.2 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
HORVU7Hr1G117890.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
MA_10432987g0020 No alias (p28002|comt1_medsa : 228.0) Caffeic acid... 0.03 Orthogroups_2024-Update
PSME_00008876-RA No alias (p93324|chomt_medsa : 161.0) Isoliquiritigenin... 0.02 Orthogroups_2024-Update
PSME_00009784-RA No alias (p28002|comt1_medsa : 427.0) Caffeic acid... 0.03 Orthogroups_2024-Update
PSME_00009826-RA No alias (p28002|comt1_medsa : 234.0) Caffeic acid... 0.03 Orthogroups_2024-Update
PSME_00016835-RA No alias (p28002|comt1_medsa : 153.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00021109-RA No alias (q8w013|comt1_catro : 194.0) Caffeic acid... 0.03 Orthogroups_2024-Update
PSME_00030764-RA No alias (q8w013|comt1_catro : 213.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00034122-RA No alias (at5g54160 : 196.0) A caffeic acid/5-hydroxyferulic acid... 0.03 Orthogroups_2024-Update
PSME_00037447-RA No alias (q8w013|comt1_catro : 270.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00041945-RA No alias (q8w013|comt1_catro : 154.0) Caffeic acid... 0.05 Orthogroups_2024-Update
PSME_00051481-RA No alias (q8w013|comt1_catro : 234.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00052449-RA No alias (q8w013|comt1_catro : 208.0) Caffeic acid... 0.04 Orthogroups_2024-Update
PSME_00052715-RA No alias (p28002|comt1_medsa : 235.0) Caffeic acid... 0.04 Orthogroups_2024-Update
Sobic.007G074800.1 No alias EC_2.1 transferase transferring one-carbon group 0.02 Orthogroups_2024-Update
Solyc06g060200 No alias Caffeic acid O-methyltransferase (AHRD V3.3 *-* Q2HTB3_MEDTR) 0.03 Orthogroups_2024-Update
Sopen10g003990 No alias O-methyltransferase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012967 Plant_MeTrfase_dimerisation 10 58
IPR001077 O_MeTrfase_2 117 322
No external refs found!