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  5. PSME_00023820-RA

PSME_00023820-RA


Description : (p07979|gub_nicpl : 308.0) Lichenase precursor (EC 3.2.1.73) (Endo-beta-1,3-1,4 glucanase) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (at4g16260 : 298.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0000200 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000200_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00023820-RA
Cluster HCCA clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
A4A49_01055 No alias glucan endo-1,3-beta-glucosidase, acidic isoform gi9 0.04 Orthogroups_2024-Update
At3g57260 No alias Beta-1,3-glucanase 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMG6] 0.03 Orthogroups_2024-Update
Brara.A01922.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.J01566.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
LOC_Os01g71820 No alias glycosyl hydrolases family 17, putative, expressed 0.02 Orthogroups_2024-Update
MA_10432716g0010 No alias (p49237|e13b_maize : 235.0) Glucan... 0.03 Orthogroups_2024-Update
MA_556757g0010 No alias (p49237|e13b_maize : 172.0) Glucan... 0.04 Orthogroups_2024-Update
PSME_00010153-RA No alias (p15797|e13b_tobac : 286.0) Glucan... 0.06 Orthogroups_2024-Update
PSME_00017374-RA No alias (p49237|e13b_maize : 292.0) Glucan... 0.05 Orthogroups_2024-Update
PSME_00017375-RA No alias (p23546|e13e_tobac : 273.0) Glucan... 0.04 Orthogroups_2024-Update
PSME_00019982-RA No alias (p07979|gub_nicpl : 308.0) Lichenase precursor (EC... 0.06 Orthogroups_2024-Update
PSME_00023819-RA No alias (p52408|e13b_prupe : 305.0) Glucan... 0.04 Orthogroups_2024-Update
PSME_00025205-RA No alias (p49237|e13b_maize : 286.0) Glucan... 0.05 Orthogroups_2024-Update
PSME_00047569-RA No alias (p07979|gub_nicpl : 243.0) Lichenase precursor (EC... 0.05 Orthogroups_2024-Update
Potri.006G048100 No alias beta-1,3-glucanase 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000490 Glyco_hydro_17 624 936
IPR000490 Glyco_hydro_17 31 340
IPR000490 Glyco_hydro_17 359 556
No external refs found!