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  5. PSME_00024038-RA

PSME_00024038-RA


Description : (at4g20050 : 487.0) Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.; QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20040.1); Has 103 Blast hits to 103 proteins in 26 species: Archae - 2; Bacteria - 18; Metazoa - 0; Fungi - 3; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 974.0) & (original description: no original description)


Gene families : OG_42_0002920 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002920_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024038-RA
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
A4A49_31908 No alias polygalacturonase qrt3 0.02 Orthogroups_2024-Update
Glyma.13G054600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10425986g0010 No alias (at4g20050 : 352.0) Encodes a polygalacturonase that... 0.04 Orthogroups_2024-Update
MA_10425986g0020 No alias (at4g20050 : 480.0) Encodes a polygalacturonase that... 0.03 Orthogroups_2024-Update
Sobic.006G212400.1 No alias polygalacturonase *(QRT3) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR024535 Pectate_lyase_SF_prot 604 823
No external refs found!