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  5. PSME_00024048-RA

PSME_00024048-RA


Description : (at2g03880 : 422.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1); Has 41924 Blast hits to 14587 proteins in 276 species: Archae - 3; Bacteria - 26; Metazoa - 84; Fungi - 128; Plants - 40967; Viruses - 0; Other Eukaryotes - 716 (source: NCBI BLink). & (q76c99|rf1_orysa : 122.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 844.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024048-RA

Target Alias Description ECC score Gene Family Method Actions
MA_84538g0010 No alias (at4g13650 : 633.0) Pentatricopeptide repeat (PPR)... 0.07 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00032333-RA No alias (at4g18750 : 689.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056680-RA No alias (at2g22070 : 511.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 283 308
IPR002885 Pentatricopeptide_repeat 388 412
IPR002885 Pentatricopeptide_repeat 182 206
IPR032867 DYW_dom 487 559
IPR002885 Pentatricopeptide_repeat 37 91
IPR002885 Pentatricopeptide_repeat 309 357
IPR002885 Pentatricopeptide_repeat 208 255
IPR002885 Pentatricopeptide_repeat 109 149
No external refs found!