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  5. PSME_00024065-RA

PSME_00024065-RA


Description : (at5g47790 : 233.0) SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)


Gene families : OG_42_0002408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002408_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024065-RA
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
PSME_00008503-RA No alias (at5g47790 : 135.0) SMAD/FHA domain-containing protein ;... 0.04 Orthogroups_2024-Update
PSME_00015581-RA No alias (at5g47790 : 129.0) SMAD/FHA domain-containing protein ;... 0.01 Orthogroups_2024-Update
PSME_00019852-RA No alias (at5g47790 : 314.0) SMAD/FHA domain-containing protein ;... 0.02 Orthogroups_2024-Update
PSME_00035492-RA No alias (at5g47790 : 318.0) SMAD/FHA domain-containing protein ;... 0.04 Orthogroups_2024-Update
PSME_00047910-RA No alias (at5g47790 : 294.0) SMAD/FHA domain-containing protein ;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR000253 FHA_dom 125 191
No external refs found!