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  5. PSME_00024216-RA

PSME_00024216-RA


Description : (at1g49230 : 130.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 9168 Blast hits to 9144 proteins in 279 species: Archae - 0; Bacteria - 0; Metazoa - 2452; Fungi - 610; Plants - 4926; Viruses - 41; Other Eukaryotes - 1139 (source: NCBI BLink). & (q9lrb7|el5_orysa : 82.0) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 260.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024216-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
A4A49_01388 No alias ring-h2 finger protein atl11 0.03 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
A4A49_20151 No alias putative ring-h2 finger protein atl61 0.03 Orthogroups_2024-Update
A4A49_31261 No alias ring-h2 finger protein atl70 0.02 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.02 Orthogroups_2024-Update
A4A49_42691 No alias ring-h2 finger protein atl7 0.02 Orthogroups_2024-Update
At2g37580 No alias RING-H2 finger protein ATL33... 0.03 Orthogroups_2024-Update
At2g42350 No alias RING-H2 finger protein ATL40... 0.03 Orthogroups_2024-Update
At4g17245 No alias AT4g17240/dl4655c [Source:UniProtKB/TrEMBL;Acc:Q940N3] 0.02 Orthogroups_2024-Update
Brara.B02267.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E02317.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.02 Orthogroups_2024-Update
GRMZM2G145382 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G175400 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G271100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G079930.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G029910.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g64620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g46100 No alias RING-H2 finger protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g49550 No alias RING-H2 finger protein ATL2A, putative, expressed 0.02 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_124750g0010 No alias (at5g01880 : 92.8) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_2679g0010 No alias (at3g16720 : 111.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_280399g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_69343g0010 No alias (at1g49230 : 137.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_85088g0010 No alias (at1g49230 : 131.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.06 Orthogroups_2024-Update
PSME_00011913-RA No alias (at3g51430 : 162.0) Although this enzyme is predicted to... 0.05 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.007G064400 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.T081800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s71_157V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.03 Orthogroups_2024-Update
Sobic.004G110300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.005G036400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G092200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.010G157300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc03g123680 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1) 0.03 Orthogroups_2024-Update
Solyc06g007230 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G42360.1) 0.03 Orthogroups_2024-Update
Solyc12g087840 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen03g041450 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen10g005680 No alias Ring finger domain 0.1 Orthogroups_2024-Update
evm.model.tig00000367.17 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 124 167
No external refs found!