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  5. PSME_00024233-RA

PSME_00024233-RA


Description : (at3g53690 : 205.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3158 Blast hits to 3141 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1307; Fungi - 709; Plants - 671; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024233-RA
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Brara.I04393.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.05 Orthogroups_2024-Update
HORVU5Hr1G065300.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
LOC_Os09g11170 No alias protein binding protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00007230-RA No alias (at3g14250 : 141.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
Pp1s161_126V6 No alias zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 185 243
IPR002867 IBR_dom 264 312
No external refs found!