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Description : (at5g46680 : 331.0) Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q76c99|rf1_orysa : 238.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 662.0) & (original description: no original description)
Gene families : OG_42_0008180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008180_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00024262-RA | |
| Cluster | HCCA clusters: Cluster_179 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi4g36740 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.B02920.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.K00477.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| MA_108808g0010 | No alias | (at5g46680 : 339.0) Pentatricopeptide repeat (PPR-like)... | 0.05 | Orthogroups_2024-Update | |
| Potri.016G017800 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.8G053900.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Solyc07g055220 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
| BP | GO:0065009 | regulation of molecular function | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 126 | 152 |
| IPR002885 | Pentatricopeptide_repeat | 58 | 85 |
| IPR002885 | Pentatricopeptide_repeat | 330 | 379 |
| IPR002885 | Pentatricopeptide_repeat | 155 | 202 |
| IPR002885 | Pentatricopeptide_repeat | 225 | 273 |
| IPR002885 | Pentatricopeptide_repeat | 401 | 449 |
| IPR002885 | Pentatricopeptide_repeat | 502 | 526 |
| IPR002885 | Pentatricopeptide_repeat | 291 | 322 |
| IPR002885 | Pentatricopeptide_repeat | 467 | 497 |
| No external refs found! |