1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00024313-RA

PSME_00024313-RA


Description : (at5g49980 : 738.0) auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1476.0) & (original description: no original description)


Gene families : OG_42_0000339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024313-RA
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
75487 No alias RNI-like superfamily protein 0.03 Orthogroups_2024-Update
At4g03190 No alias GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12] 0.03 Orthogroups_2024-Update
Brara.C02040.1 No alias component *(COI) of jasmonic acid receptor complex 0.03 Orthogroups_2024-Update
Brara.I04357.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) 0.02 Orthogroups_2024-Update
GRMZM2G135978 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G254300 No alias RNI-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G077570.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) 0.03 Orthogroups_2024-Update
LOC_Os11g31620 No alias OsFBL55 - F-box domain and LRR containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10189662g0010 No alias (at3g26810 : 261.0) auxin signaling F-box 2 (AFB2);... 0.03 Orthogroups_2024-Update
Pp1s12_347V6 No alias coronitine insensitive 1 0.02 Orthogroups_2024-Update
Pp1s90_156V6 No alias No description available 0.02 Orthogroups_2024-Update
Sobic.009G157200.1 No alias component *(COI) of jasmonic acid receptor complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!