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  5. PSME_00024314-RA

PSME_00024314-RA


Description : (at5g49980 : 743.0) auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1486.0) & (original description: no original description)


Gene families : OG_42_0000339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024314-RA
Cluster HCCA clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
At3g26810 No alias AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7] 0.03 Orthogroups_2024-Update
At3g62980 No alias TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54] 0.02 Orthogroups_2024-Update
At4g03190 No alias GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12] 0.04 Orthogroups_2024-Update
Glyma.08G059500 No alias F-box/RNI-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G062100 No alias RNI-like superfamily protein 0.03 Orthogroups_2024-Update
MA_108477g0010 No alias (at2g39940 : 652.0) Encodes a protein containing... 0.04 Orthogroups_2024-Update
MA_47869g0020 No alias (at4g24390 : 219.0) RNI-like superfamily protein; BEST... 0.03 Orthogroups_2024-Update
Potri.014G134800 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s187_72V6 No alias TLP3B TIR1-like auxin receptor protein 0.02 Orthogroups_2024-Update
Sopen02g023990 No alias Leucine Rich repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!