Description : (at2g13600 : 445.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 132.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 890.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00024326-RA | |
Cluster | HCCA clusters: Cluster_230 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
45004 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
A4A49_25971 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g41651 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.J00664.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G030148 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G172800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.17G117001 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g60250 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g41120 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g30710 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os08g25280 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_10426261g0020 | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_10431227g0020 | No alias | (at3g57430 : 629.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_210089g0010 | No alias | (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_28607g0010 | No alias | (at4g02750 : 763.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_4503g0010 | No alias | (at2g27610 : 599.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
MA_462184g0010 | No alias | (at4g13650 : 568.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_472579g0010 | No alias | (at4g33170 : 615.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_52613g0020 | No alias | (at4g33170 : 570.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_668740g0020 | No alias | (at3g13770 : 627.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_835083g0010 | No alias | (at1g11290 : 592.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_95261g0010 | No alias | (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
Potri.003G058700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Sobic.002G200500.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.02 | Orthogroups_2024-Update | |
Solyc11g064750 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0010181 | FMN binding | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 302 | 341 |
IPR002885 | Pentatricopeptide_repeat | 345 | 391 |
IPR002885 | Pentatricopeptide_repeat | 246 | 289 |
IPR002885 | Pentatricopeptide_repeat | 60 | 106 |
IPR002885 | Pentatricopeptide_repeat | 192 | 213 |
IPR002885 | Pentatricopeptide_repeat | 133 | 157 |
IPR002885 | Pentatricopeptide_repeat | 419 | 443 |
IPR002885 | Pentatricopeptide_repeat | 163 | 190 |
IPR002885 | Pentatricopeptide_repeat | 215 | 240 |
No external refs found! |