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PSME_00024555-RA


Description : (at4g02750 : 413.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (reliability: 750.0) & (original description: no original description)


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024555-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Glyma.16G022100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_356g0010 No alias (at3g23330 : 487.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Sobic.001G117600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G182600.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g039950 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g005200 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 362 475
IPR002885 Pentatricopeptide_repeat 189 236
IPR002885 Pentatricopeptide_repeat 98 120
IPR002885 Pentatricopeptide_repeat 330 358
No external refs found!