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PSME_00024752-RA


Description : (at5g08200 : 163.0) peptidoglycan-binding LysM domain-containing protein; BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 390 Blast hits to 387 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 233; Fungi - 7; Plants - 113; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)


Gene families : OG_42_0002361 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002361_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024752-RA
Cluster HCCA clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G089910.8 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00203_0060 kfl00203_0060_v1.1 (at5g23130 : 84.3) Peptidoglycan-binding LysM... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018392 LysM_dom 52 95
No external refs found!