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  5. PSME_00024924-RA

PSME_00024924-RA


Description : (at4g02290 : 664.0) glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (q8lq92|gun3_orysa : 642.0) Endoglucanase 3 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 3) (OsGLU8) - Oryza sativa (Rice) & (reliability: 1328.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024924-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
99802 No alias glycosyl hydrolase 9C2 0.02 Orthogroups_2024-Update
At1g19940 No alias Endoglucanase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXI9] 0.04 Orthogroups_2024-Update
At1g22880 No alias Endoglucanase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q2V4L8] 0.02 Orthogroups_2024-Update
At4g11050 No alias Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0] 0.02 Orthogroups_2024-Update
Bradi1g54580 No alias cellulase 2 0.02 Orthogroups_2024-Update
Brara.G03367.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01325.1 No alias class-C endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Brara.I03254.1 No alias class-B endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Glyma.02G049000 No alias glycosyl hydrolase 9B5 0.02 Orthogroups_2024-Update
LOC_Os01g12030 No alias endoglucanase precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g21070 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g57860 No alias endoglucanase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10430521g0010 No alias (at3g43860 : 535.0) glycosyl hydrolase 9A4 (GH9A4);... 0.03 Orthogroups_2024-Update
MA_10437098g0010 No alias (at4g11050 : 708.0) glycosyl hydrolase 9C3 (GH9C3);... 0.03 Orthogroups_2024-Update
MA_195523g0010 No alias (at3g43860 : 298.0) glycosyl hydrolase 9A4 (GH9A4);... 0.03 Orthogroups_2024-Update
MA_216572g0010 No alias (at1g02800 : 571.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
Mp1g20540.1 No alias Endoglucanase 19 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp8g17860.1 No alias Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.02 Orthogroups_2024-Update
PSME_00006676-RA No alias (at4g02290 : 363.0) glycosyl hydrolase 9B13 (GH9B13);... 0.02 Orthogroups_2024-Update
PSME_00009215-RA No alias (at1g02800 : 490.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
PSME_00041194-RA No alias (at1g23210 : 550.0) glycosyl hydrolase 9B6 (GH9B6);... 0.04 Orthogroups_2024-Update
Pp1s100_137V6 No alias endo- -beta- 0.03 Orthogroups_2024-Update
Pp1s100_139V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s149_10V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s376_19V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s37_355V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Seita.3G050200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G148500.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Sobic.004G244600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 50 502
No external refs found!