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  5. PSME_00024925-RA

PSME_00024925-RA


Description : (q7x6j9|exb17_orysa : 300.0) Expansin-B17 precursor (OsEXPB17) (Beta-expansin-17) (OsaEXPb1.13) - Oryza sativa (Rice) & (at4g28250 : 286.0) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 2090 Blast hits to 2086 proteins in 147 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 5; Plants - 2024; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024925-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
At1g65680 No alias Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6] 0.03 Orthogroups_2024-Update
At2g20750 No alias Expansin-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU2] 0.03 Orthogroups_2024-Update
At4g28250 No alias EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9] 0.02 Orthogroups_2024-Update
Brara.E00482.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G013002 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G013671 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G059785 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G094990 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G342246 No alias expansin B2 0.03 Orthogroups_2024-Update
LOC_Os02g44108 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g40700 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g40720 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10427897g0010 No alias (q7x6j9|exb17_orysa : 304.0) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
MA_166764g0010 No alias (q7x6j9|exb17_orysa : 194.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
MA_78155g0010 No alias (q7x6j9|exb17_orysa : 256.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00005304-RA No alias (q6h676|exb11_orysa : 186.0) Expansin-B11 precursor... 0.04 Orthogroups_2024-Update
PSME_00022853-RA No alias (at2g20750 : 210.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00038846-RA No alias (at2g20750 : 157.0) member of BETA-EXPANSINS. Naming... 0.03 Orthogroups_2024-Update
PSME_00039735-RA No alias (at2g20750 : 156.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00039911-RA No alias (at2g20750 : 117.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00044323-RA No alias (at2g20750 : 200.0) member of BETA-EXPANSINS. Naming... 0.05 Orthogroups_2024-Update
PSME_00048195-RA No alias (q7xt40|exb15_orysa : 117.0) Expansin-B15 precursor... 0.05 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Pp1s313_58V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Sobic.001G301500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G301600.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 53 133
IPR007117 Expansin_CBD 147 228
No external refs found!