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  5. PSME_00024961-RA

PSME_00024961-RA


Description : (at1g62670 : 333.0) Encodes a pentatricopeptide repeat protein required for 5' end processing of nad9 and cox3 mRNAs in mitochondria.; rna processing factor 2 (RPF2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 71790 Blast hits to 15506 proteins in 316 species: Archae - 6; Bacteria - 84; Metazoa - 1433; Fungi - 1460; Plants - 65974; Viruses - 0; Other Eukaryotes - 2833 (source: NCBI BLink). & (q76c99|rf1_orysa : 303.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 642.0) & (original description: no original description)


Gene families : OG_42_0125445 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00024961-RA
Cluster HCCA clusters: Cluster_230


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 337 355
IPR002885 Pentatricopeptide_repeat 247 267
IPR002885 Pentatricopeptide_repeat 276 302
IPR002885 Pentatricopeptide_repeat 356 387
IPR002885 Pentatricopeptide_repeat 307 335
IPR002885 Pentatricopeptide_repeat 388 419
IPR002885 Pentatricopeptide_repeat 562 611
IPR002885 Pentatricopeptide_repeat 632 681
IPR002885 Pentatricopeptide_repeat 422 471
IPR002885 Pentatricopeptide_repeat 492 541
No external refs found!