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  5. PSME_00025008-RA

PSME_00025008-RA


Description : (at1g24090 : 101.0) RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)


Gene families : OG_42_0002280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025008-RA

Target Alias Description ECC score Gene Family Method Actions
PSME_00005771-RA No alias (at1g24090 : 99.8) RNase H family protein; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
PSME_00006193-RA No alias (at1g24090 : 100.0) RNase H family protein; FUNCTIONS... 0.07 Orthogroups_2024-Update
PSME_00008241-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00017604-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00028602-RA No alias (at4g21790 : 110.0) encodes a host factor that is... 0.03 Orthogroups_2024-Update
PSME_00049931-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00054516-RA No alias (at1g24090 : 85.9) RNase H family protein; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 63 150
IPR002156 RNaseH_domain 296 416
No external refs found!