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  5. PSME_00025081-RA

PSME_00025081-RA


Description : (at5g16750 : 352.0) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.; TORMOZEMBRYO DEFECTIVE (TOZ); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 153281 Blast hits to 38108 proteins in 953 species: Archae - 96; Bacteria - 13855; Metazoa - 64321; Fungi - 32637; Plants - 21715; Viruses - 0; Other Eukaryotes - 20657 (source: NCBI BLink). & (p93107|pf20_chlre : 82.8) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 704.0) & (original description: no original description)


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025081-RA

Target Alias Description ECC score Gene Family Method Actions
PSME_00000767-RA No alias (at5g16750 : 375.0) Encodes a nucleolar localized WD-40... 0.01 Orthogroups_2024-Update
PSME_00040435-RA No alias (at5g16750 : 352.0) Encodes a nucleolar localized WD-40... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 207 240
IPR001680 WD40_repeat 247 282
IPR001680 WD40_repeat 287 324
IPR001680 WD40_repeat 155 187
No external refs found!