- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at5g39710 : 306.0) EMBRYO DEFECTIVE 2745 (EMB2745); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 65335 Blast hits to 15466 proteins in 320 species: Archae - 6; Bacteria - 88; Metazoa - 1398; Fungi - 1479; Plants - 59659; Viruses - 0; Other Eukaryotes - 2705 (source: NCBI BLink). & (q76c99|rf1_orysa : 251.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (gnl|cdd|68872 : 94.0) no description available & (reliability: 552.0) & (original description: no original description)
Gene families : OG_42_0002181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002181_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00025125-RA | |
| Cluster | HCCA clusters: Cluster_208 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| CC | GO:0005694 | chromosome | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| MF | GO:0016829 | lyase activity | IEP | Predicted GO |
| MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
| MF | GO:0016843 | amine-lyase activity | IEP | Predicted GO |
| MF | GO:0016844 | strictosidine synthase activity | IEP | Predicted GO |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 362 | 392 |
| IPR002885 | Pentatricopeptide_repeat | 257 | 288 |
| IPR002885 | Pentatricopeptide_repeat | 436 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 544 | 593 |
| IPR002885 | Pentatricopeptide_repeat | 298 | 345 |
| IPR002885 | Pentatricopeptide_repeat | 193 | 240 |
| IPR002885 | Pentatricopeptide_repeat | 474 | 523 |
| IPR002885 | Pentatricopeptide_repeat | 163 | 186 |
| No external refs found! |