1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025169-RA

PSME_00025169-RA


Description : (at2g04850 : 359.0) Auxin-responsive family protein; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 646 Blast hits to 646 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 94; Fungi - 69; Plants - 456; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 718.0) & (original description: no original description)


Gene families : OG_42_0000188 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000188_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025169-RA

Target Alias Description ECC score Gene Family Method Actions
412554 No alias Auxin-responsive family protein 0.04 Orthogroups_2024-Update
65529 No alias Auxin-responsive family protein 0.02 Orthogroups_2024-Update
GRMZM2G112530 No alias Cytochrome b561/ferric reductase transmembrane with... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR006593 Cyt_b561/ferric_Rdtase_TM 208 332
IPR005018 DOMON_domain 81 184
No external refs found!