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  5. PSME_00025208-RA

PSME_00025208-RA


Description : (at1g55740 : 1032.0) seed imbibition 1 (SIP1); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 563 Blast hits to 527 proteins in 159 species: Archae - 29; Bacteria - 119; Metazoa - 0; Fungi - 82; Plants - 322; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (q93xk2|stsyn_pea : 309.0) Stachyose synthase precursor (EC 2.4.1.67) (Galactinol--raffinose galactosyltransferase) - Pisum sativum (Garden pea) & (reliability: 2064.0) & (original description: no original description)


Gene families : OG_42_0000676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025208-RA
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
A4A49_20430 No alias putative galactinol--sucrose galactosyltransferase 2 0.05 Orthogroups_2024-Update
At5g20250 No alias Raffinose synthase family protein... 0.02 Orthogroups_2024-Update
Bradi1g48050 No alias Raffinose synthase family protein 0.03 Orthogroups_2024-Update
Bradi2g04310 No alias Raffinose synthase family protein 0.03 Orthogroups_2024-Update
Brara.J01587.1 No alias galactinol-sucrose galactosyltransferase 0.04 Orthogroups_2024-Update
Glyma.05G003900 No alias Raffinose synthase family protein 0.04 Orthogroups_2024-Update
Glyma.17G111400 No alias Raffinose synthase family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G027930.7 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os06g07600 No alias uncharacterized glycosyltransferase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00005466-RA No alias (at5g20250 : 946.0) encodes a member of glycosyl... 0.05 Orthogroups_2024-Update
PSME_00026740-RA No alias (at5g20250 : 246.0) encodes a member of glycosyl... 0.03 Orthogroups_2024-Update
Potri.006G065700 No alias Raffinose synthase family protein 0.03 Orthogroups_2024-Update
Potri.007G123400 No alias Raffinose synthase family protein 0.04 Orthogroups_2024-Update
Potri.018G126400 No alias Raffinose synthase family protein 0.02 Orthogroups_2024-Update
Seita.4G056900.1 No alias galactinol-sucrose galactosyltransferase 0.03 Orthogroups_2024-Update
Solyc07g007930 No alias Alkaline alpha-galactosidase seed imbibition protein... 0.03 Orthogroups_2024-Update
Solyc07g065980 No alias alkaline alpha-galactosidase seed imbibition protein 0.04 Orthogroups_2024-Update
Sopen02g031260 No alias Raffinose synthase or seed imbibition protein Sip1 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 8 740
No external refs found!