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  5. PSME_00025248-RA

PSME_00025248-RA


Description : (q6h676|exb11_orysa : 171.0) Expansin-B11 precursor (OsEXPB11) (Beta-expansin-11) (OsaEXPb1.20) - Oryza sativa (Rice) & (at2g20750 : 169.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025248-RA
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
A4A49_26120 No alias expansin-b3 0.04 Orthogroups_2024-Update
At4g28250 No alias EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9] 0.02 Orthogroups_2024-Update
Bradi3g33140 No alias expansin B2 0.02 Orthogroups_2024-Update
Bradi3g33160 No alias expansin B2 0.02 Orthogroups_2024-Update
GRMZM2G059785 No alias expansin B2 0.02 Orthogroups_2024-Update
HORVU4Hr1G088080.4 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G060410.2 No alias Unknown function 0.01 Orthogroups_2024-Update
PSME_00003968-RA No alias (q7x6j9|exb17_orysa : 259.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00007984-RA No alias (at2g20750 : 186.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00010298-RA No alias (at2g20750 : 169.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00010585-RA No alias (at2g20750 : 194.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00014538-RA No alias (q6h676|exb11_orysa : 160.0) Expansin-B11 precursor... 0.04 Orthogroups_2024-Update
PSME_00039911-RA No alias (at2g20750 : 117.0) member of BETA-EXPANSINS. Naming... 0.06 Orthogroups_2024-Update
PSME_00042515-RA No alias (at1g65680 : 150.0) member of BETA-EXPANSINS. Naming... 0.04 Orthogroups_2024-Update
PSME_00048195-RA No alias (q7xt40|exb15_orysa : 117.0) Expansin-B15 precursor... 0.05 Orthogroups_2024-Update
Potri.019G101900 No alias expansin B3 0.02 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Seita.2G122800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G300400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 73 113
No external refs found!