1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025285-RA

PSME_00025285-RA


Description : (at5g45775 : 253.0) Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink). & (p46287|rl11_medsa : 247.0) 60S ribosomal protein L11 (L5) - Medicago sativa (Alfalfa) & (reliability: 506.0) & (original description: no original description)


Gene families : OG_42_0001107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025285-RA
Cluster HCCA clusters: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G111500 No alias Ribosomal L5P family protein 0.03 Orthogroups_2024-Update
PSME_00035283-RA No alias (at5g45775 : 260.0) Ribosomal L5P family protein;... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004371 glycerone kinase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 56 153
No external refs found!