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  5. PSME_00025378-RA

PSME_00025378-RA


Description : (at1g43710 : 407.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description)


Gene families : OG_42_0001375 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001375_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025378-RA
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
At1g43710 No alias SDC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA97] 0.03 Orthogroups_2024-Update
Brara.E01756.1 No alias serine decarboxylase 0.02 Orthogroups_2024-Update
PSME_00007789-RA No alias (at1g43710 : 534.0) embryo defective 1075 (emb1075);... 0.06 Orthogroups_2024-Update
PSME_00026969-RA No alias (at1g43710 : 394.0) embryo defective 1075 (emb1075);... 0.06 Orthogroups_2024-Update
Pp1s47_119V6 No alias group ii plp 0.02 Orthogroups_2024-Update
Solyc08g066220 No alias Histidine decarboxylase (AHRD V3.3 *** W0KR26_TOBAC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016831 carboxy-lyase activity IEA InterProScan predictions
BP GO:0019752 carboxylic acid metabolic process IEA InterProScan predictions
MF GO:0030170 pyridoxal phosphate binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 3 194
No external refs found!