PSME_00025506-RA

Description : (at4g36130 : 481.0) Ribosomal protein L2 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT2G18020.1); Has 10610 Blast hits to 10603 proteins in 3612 species: Archae - 317; Bacteria - 5622; Metazoa - 462; Fungi - 292; Plants - 1215; Viruses - 0; Other Eukaryotes - 2702 (source: NCBI BLink). & (p25998|rl8_tobac : 480.0) 60S ribosomal protein L8 (60S ribosomal protein L2) - Nicotiana tabacum (Common tobacco) & (reliability: 962.0) & (original description: no original description)

Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00025506-RA
Cluster	HCCA clusters: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
170971	No alias	Ribosomal protein L2 family	0.03	Orthogroups_2024-Update
A4A49_56239	No alias	60s ribosomal protein l8	0.03	Orthogroups_2024-Update
Bradi4g04120	No alias	Ribosomal protein L2 family	0.03	Orthogroups_2024-Update
Brara.G00216.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.K01326.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre12.g535851	No alias	Ribosomal protein L2 family	0.02	Orthogroups_2024-Update
HORVU5Hr1G021730.2	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Mp7g01860.1	No alias	component RPL8 of LSU proteome component	0.08	Orthogroups_2024-Update
Pp1s37_247V6	No alias	60s ribosomal protein l2	0.04	Orthogroups_2024-Update
Seita.2G112000.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Seita.3G330100.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.008G135000.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Solyc07g063890	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc10g006580	No alias	ribosomal protein L2	0.04	Orthogroups_2024-Update
Solyc12g005330	No alias	Ribosomal protein L2 family (AHRD V3.3 *** AT4G36130.1)	0.04	Orthogroups_2024-Update
Sopen07g032020	No alias	Ribosomal Proteins L2, C-terminal domain	0.04	Orthogroups_2024-Update
Sopen10g002530	No alias	Ribosomal Proteins L2, C-terminal domain	0.04	Orthogroups_2024-Update
evm.model.contig_2057.10	No alias	(at4g36130 : 380.0) Ribosomal protein L2 family;...	0.05	Orthogroups_2024-Update
evm.model.tig00020965.22	No alias	(at2g18020 : 400.0) embryo defective 2296 (EMB2296);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Predicted GO
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	98	230
IPR022666	Rbsml_prot_L2_RNA-bd_dom	13	90

External Links

No external refs found!

PSME_00025506-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation