1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025538-RA

PSME_00025538-RA


Description : (at3g03740 : 195.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025538-RA
Cluster HCCA clusters: Cluster_440

Target Alias Description ECC score Gene Family Method Actions
Bradi1g32260 No alias BTB-POZ and MATH domain 1 0.02 Orthogroups_2024-Update
Bradi1g59760 No alias BTB/POZ/MATH-domains containing protein 0.01 Orthogroups_2024-Update
Bradi5g22368 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
Brara.D02411.1 No alias substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Brara.J01683.1 No alias substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
GRMZM2G027688 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
GRMZM2G143782 No alias BTB-POZ and MATH domain 1 0.02 Orthogroups_2024-Update
GRMZM2G148213 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
GRMZM2G166049 No alias BTB-POZ and MATH domain 4 0.02 Orthogroups_2024-Update
HORVU5Hr1G104190.1 No alias substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase complex 0.07 Orthogroups_2024-Update
LOC_Os08g40490 No alias BTB/POZ domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g41190 No alias MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.01 Orthogroups_2024-Update
Solyc11g072070 No alias BTB-POZ and MATH domain protein (AHRD V3.3 *** B9VXZ7_CAPAN) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011705 BACK 167 206
IPR000210 BTB/POZ_dom 51 157
No external refs found!