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  5. PSME_00025552-RA

PSME_00025552-RA


Description : (p59287|cass_ricco : 251.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (at4g16730 : 241.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025552-RA
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
407280 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.04 Orthogroups_2024-Update
412139 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07214 No alias (-)-alpha-terpineol synthase 0.03 Orthogroups_2024-Update
Glyma.12G102000 No alias terpene synthase-like sequence-1,8-cineole 0.02 Orthogroups_2024-Update
HORVU7Hr1G111960.3 No alias EC_4.2 carbon-oxygen lyase &... 0.02 Orthogroups_2024-Update
MA_10196363g0010 No alias (p59287|cass_ricco : 245.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
MA_10435955g0010 No alias (o04408|ksa_pea : 162.0) Ent-kaurene synthase A,... 0.03 Orthogroups_2024-Update
MA_9461183g0010 No alias (at4g16740 : 171.0) Encodes an (E,E)-alpha-farnesene... 0.06 Orthogroups_2024-Update
PSME_00007330-RA No alias (at4g16740 : 150.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00011600-RA No alias (p59287|cass_ricco : 229.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00017294-RA No alias (at4g02780 : 138.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00034521-RA No alias (p93665|dcs1_goshi : 185.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
Sobic.006G027500.2 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Solyc01g105880 No alias Monoterpenoid synthase 2 0.03 Orthogroups_2024-Update
Solyc02g079910 No alias Terpene synthase (AHRD V3.3 *-* G5CV48_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 308 572
IPR001906 Terpene_synth_N 71 267
No external refs found!