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  5. PSME_00025560-RA

PSME_00025560-RA


Description : (at1g80820 : 325.0) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.; cinnamoyl coa reductase (CCR2); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase 1 (TAIR:AT1G15950.1); Has 10779 Blast hits to 10766 proteins in 1817 species: Archae - 140; Bacteria - 4512; Metazoa - 410; Fungi - 946; Plants - 2512; Viruses - 14; Other Eukaryotes - 2245 (source: NCBI BLink). & (p51108|dfra_maize : 174.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Zea mays (Maize) & (reliability: 650.0) & (original description: no original description)


Gene families : OG_42_0000056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025560-RA
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
227659 No alias cinnamoyl coa reductase 1 0.03 Orthogroups_2024-Update
227661 No alias cinnamoyl coa reductase 1 0.03 Orthogroups_2024-Update
97205 No alias dihydroflavonol 4-reductase-like1 0.02 Orthogroups_2024-Update
At1g76470 No alias NAD(P)-binding Rossmann-fold superfamily protein... 0.03 Orthogroups_2024-Update
Brara.I01754.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 Orthogroups_2024-Update
GRMZM2G468439 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G019900 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os08g34280 No alias cinnamoyl-CoA reductase, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g03990.1 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Mp8g08710.1 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
PSME_00028440-RA No alias (at1g15950 : 421.0) Encodes a cinnamoyl CoA reductase.... 0.04 Orthogroups_2024-Update
PSME_00032170-RA No alias (at1g80820 : 248.0) Encodes an cinnamoyl CoA reductase... 0.04 Orthogroups_2024-Update
Potri.001G256400 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G229500 No alias dihydroflavonol 4-reductase 0.03 Orthogroups_2024-Update
Seita.2G147600.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
Seita.4G048300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G038000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 53 276
No external refs found!